DNA Biosentinels

(A) a micro flow device designed by A. Deshmukh and co-workers. The central element is free floating and can be moved by the fluid. (B) glowing streaks trace fluid pathways through the device. "The flow was seeded with fluorescent microspheres," explains Muller. "Long-exposure photographs of the spheres were taken to reveal the details of the flow."

To stretch and hold the fragile strands, a carefully spaced array of posts interrupts the flow. "If you have a forest of posts in the flow - a little set of obstacles - then the DNA loops around them, and gets stuck and stretched as it tries to unwind from the posts," she explains.

Once a strand is stretched, Muller uses fluorescent markers that locate and latch onto interesting areas of the DNA. The stretching makes it easier for the researchers to locate where the markers are. It also makes it easier for the markers to find their target sites: when the DNA is stretched out, the markers don't have to penetrate the tangles of coiled-up DNA.

Protecting astronauts from deep-space radiation is a still-unsolved problem, and one that must be successfully tackled before deep space can be safely explored. Most approaches to the problem rely on shielding, and on limiting astronaut exposure.

Images of individual DNA molecules flowing through the micro flow device at positions denoted by letters A through G. "The DNA is stretched and rotated by the flow. DNA stretching is greatest in regions of high flow acceleration," says Muller.

Muller's work suggests the possibility of finding astronauts who themselves are more resistant. Just as some versions of genes are more prone to the mutations that lead to problems like breast cancer, others may be more easily damaged by the intense radiation of deep space. "You might use this device to seek out individuals who are not at high risk for these particular types of mutations," she speculates. "You'd be looking for particular genes, or for particular sequences within a gene, that were correlated with 'radiation toughness.'"

Because her method is so straightforward, it might lend itself to a future technology: portable DNA analyser's. Astronauts on long space voyages could take one along and test their own genes for radiation damage. At the first sign of trouble they could take precautions: avoiding space walks or spending the rest of the journey in heavily-shielded parts of the ship.

DNA "biosentinels," as Muller calls them, would benefit more people than just astronauts. The devices could be used to examine anyone's genes for, say, the tendency to develop a certain illness or to react in a particular way to a medication. Medical researchers, criminologists, pharmaceutical manufacturers: they would all like to have one.

That's in the future, though. Meanwhile, says Muller, "there's a lot of basic fundamental science that going to come out of understanding how to use flow to manipulate large molecules. There are still many challenges to making this work and a lot of interesting questions I think we're going to answer along the way."